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        <link>http://bmi217.stanford.edu/</link>
        <lastBuildDate>Wed, 11 Mar 2009 01:49:08 -0700</lastBuildDate>
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            <title>bmi217</title>
            <link>http://bmi217.stanford.edu/</link>
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        <item>
            <title>old</title>
            <link>http://bmi217.stanford.edu/doku.php?id=old</link>
            <description>Previous Years' Pages

	*   2007-2008 Winter</description>
            <pubDate>Thu, 13 Nov 2008 15:12:28 -0700</pubDate>
        </item>
        <item>
            <title>posters</title>
            <link>http://bmi217.stanford.edu/doku.php?id=posters</link>
            <description>Feel free to print and circulate these posters advertising this class.

[Acrobat PDF file]

 [Poster 1]  [Poster 2]  [Poster 3]  [Poster 4]  [Poster 5]  [Poster 6]</description>
            <pubDate>Thu, 04 Jan 2007 17:08:16 -0700</pubDate>
        </item>
        <item>
            <title>r_handout</title>
            <link>http://bmi217.stanford.edu/doku.php?id=r_handout</link>
            <description>Download here</description>
            <pubDate>Thu, 18 Jan 2007 18:46:36 -0700</pubDate>
        </item>
        <item>
            <title>schedule_win0708</title>
            <link>http://bmi217.stanford.edu/doku.php?id=schedule_win0708</link>
            <description>All times 3:30 pm to 4:45 pm in Alway M-104, unless otherwise specified.

  Monday Tuesday Wednesday Thursday Friday January 7 8 9 
 Lecture 1:
 Intro 10 
 TA session: 
 Introduction to R 11 
 Problem set 1 out  14 
  Lecture 2:
 Review of eukaryotic 
 molecular biology for 
 the bioinformatician 15 
 TA session: 
 Introduction to MySQL  16 
 Lecture 3:
 Genomes and genome maps 17   
  18 
 Problem set 1 due
 
 Problem set 2 out
  21 
 No class
 MLK Day 22 23 
 Lecture 4:
 Polymorphisms
 24 25 
…</description>
            <pubDate>Thu, 01 Jan 2009 17:22:42 -0700</pubDate>
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        <item>
            <title>schedule_win0809</title>
            <link>http://bmi217.stanford.edu/doku.php?id=schedule_win0809</link>
            <description>Google Calendar Version

All times 3:15 pm to 4:30 pm in Alway M-106, unless otherwise specified.

  Monday Tuesday Wednesday Thursday Friday January 5 
 
 
 6 
 
 
  7 
 Lecture 1:
 Intro 8 
 
 
  9 
 
 
   12 
  Lecture 2:
  Review of eukaryotic 
 molecular biology for 
 the bioinformatician 
 Problem set 1 out 13 
 TA session: 
 Introduction to R 
 3 pm, MSOB x-275 (Lusted) 
 
  14 
 Lecture 3:
 Genomes and genome maps 
 
 
 
 15  
 TA session: 
 Introduction to MySQL 
 3 pm, MSOB x-275 (Lust…</description>
            <pubDate>Wed, 04 Mar 2009 15:33:18 -0700</pubDate>
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        <item>
            <title>start</title>
            <link>http://bmi217.stanford.edu/doku.php?id=start</link>
            <description>[logo]



News

	*  Mar 3: Tomorrow's lecture will be held in CCSR 4105. We'll be back to our normal space next week.
	*  Feb 26: Pathways and disease lecture slides available [ here].
	*  Feb 25: Midterm histogram  here. Median 61, stdev 10.45.
	*  Feb 19: Problem set 4 histogram  here. Mean 90.5, stdev 19.23.
	*  Feb 18: Example Question for the exam has been posted here.
	*  Feb 11: Histogram for pset 3 is  here. Mean: 87.45, Stdev: 16.80
	*  Feb 9: Lecture slides for today's lecture on prote…</description>
            <pubDate>Tue, 03 Mar 2009 14:51:08 -0700</pubDate>
        </item>
        <item>
            <title>syllabus</title>
            <link>http://bmi217.stanford.edu/doku.php?id=syllabus</link>
            <description>Advanced tools and questions in bioinformatics

	* 	Why the push towards translational medicine?
	* 	How can bioinformatics enable translational medicine?
	* 	What is Systems Biology?
	* 	More than thirty large scale measurement and experimental modalities can be used in molecular biology: what are they? Microarrays, SAGE, 2D-PAGE, quantitative proteomics, etc.
	* 	What makes these measurement modalities nearly comprehensive?
	* 	What kind of data do these measurement modalities represent?
	* 	H…</description>
            <pubDate>Wed, 09 Jan 2008 14:46:01 -0700</pubDate>
        </item>
        <item>
            <title>tutorialsessions</title>
            <link>http://bmi217.stanford.edu/doku.php?id=tutorialsessions</link>
            <description>The TAs will be offering two tutorials that may be useful for homeworks.

Introduction to R

Introduction to MySQL

	*  The two csv (comma separated value) files used during this tutorial are located here: authors.txt and books.txt</description>
            <pubDate>Wed, 14 Jan 2009 21:44:02 -0700</pubDate>
        </item>
        <item>
            <title>tutorialsessions_0708</title>
            <link>http://bmi217.stanford.edu/doku.php?id=tutorialsessions_0708</link>
            <description>The TAs will be offering two tutorials that may be useful for homeworks.

Introduction to R

	*  Thursday, Jan 10 from 3:30 – 4:30 in Alway, M 106

Introduction to MySQL

	*  Tuesday, Jan 15 from 3:30 – 4:30 in Alway, M 106 


Stay tuned for more information.</description>
            <pubDate>Thu, 01 Jan 2009 17:18:55 -0700</pubDate>
        </item>
        <item>
            <title>why-this-course</title>
            <link>http://bmi217.stanford.edu/doku.php?id=why-this-course</link>
            <description>Moore’s Law states that computer power doubles every 18 months.

Life science data doubles every 6 months.

Brute force won’t do it.


----------

The genes involved in diabetes, cancer and every other disease have already been cataloged and measured.</description>
            <pubDate>Tue, 09 Jan 2007 09:26:08 -0700</pubDate>
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